PlantTFDB
Plant Transcription Factor Database
v4.0
Previous version: v3.0
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID XP_016475140.1
Organism
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Solanaceae; Nicotianoideae; Nicotianeae; Nicotiana
Family STAT
Protein Properties Length: 692aa    MW: 77880.8 Da    PI: 5.1218
Description STAT family protein
Gene Model
Gene Model ID Type Source Coding Sequence
XP_016475140.1genomeNCBIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1STAT190.91.4e-592063251120
            STAT   1 ldvvllnalgqpvekdvevvasLlyadsglvveksddaeapLLisydGvefssedrplkllrGrasfklkisqLsskcdnrLfrikfeipklkky 95 
                     ldv+l++ +++p++ +vevvasL+yad+ ++vek+ d+eapLL++ydG+e++s+drp+k++ GrasfklkisqLsskcdnrLf+i+feipk+ +y
  XP_016475140.1 206 LDVTLMDNFSRPITEEVEVVASLVYADDEAPVEKPVDDEAPLLTNYDGIEYASSDRPSKVISGRASFKLKISQLSSKCDNRLFCIRFEIPKMGNY 300
                     89********************************************************************************************* PP

            STAT  96 pfleavskpirCisrsrntrssslt 120
                     pfle +s+pirCisr+rntr++sl+
  XP_016475140.1 301 PFLEIFSRPIRCISRNRNTRAASLM 325
                     ********************99876 PP

Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
Gene3DG3DSA:2.60.120.2004.1E-522149IPR013320Concanavalin A-like lectin/glucanase domain
SuperFamilySSF498991.98E-822126IPR013320Concanavalin A-like lectin/glucanase domain
SuperFamilySSF555503.47E-10596654IPR000980SH2 domain
Gene3DG3DSA:3.30.505.101.5E-7596650IPR000980SH2 domain
PROSITE profilePS5000110.241598692IPR000980SH2 domain
Sequence ? help Back to Top
Protein Sequence    Length: 692 aa     Download sequence    Send to blast
MGIQDYGFLE DLQVEFKDYD ATNGVFLCFW FYLNKASTLP STILLQNHSD VTSHAPFLLL  60
DEKKRLLLYP LLTSWREDVY ATSESEFSTK KWVHVGCEVT ENLLRLYLDG EIVGEKSLTS  120
SLNNDSVSDS SEISFPCISG KGSQLDGYVY SAELLPVVSS IKNHYVKDPP VQLSIDSSSA  180
HEIEEDTDGV WSIVGGKASC RRNFSLDVTL MDNFSRPITE EVEVVASLVY ADDEAPVEKP  240
VDDEAPLLTN YDGIEYASSD RPSKVISGRA SFKLKISQLS SKCDNRLFCI RFEIPKMGNY  300
PFLEIFSRPI RCISRNRNTR AASLMLRKSS LGIHLLNGSQ SPILEDGSSD LPCIVREAKQ  360
SPSSKRVKLG QEKLCANFKD DFVLQQANGE SKSHSWISED NYAYLNSLVA RPVSHGGAQN  420
FSSDSENSET TNSGIDDFPS NIDPISDVDV FKYCLGDLNE RRLLLKEMAM SAKEEELATF  480
AERISLFSGC SHHRHQISIS KRLIEVGIKC WNLISDDNHH VLWENLVSGL QEHFLKMTFG  540
HTRSLTHQDF DLLRRVSGCQ DLVSQDNFEK VWCWLYPIAF TLSQQCITSL WGSAPPVWIE  600
GFITKEEAES SLRGQDPGTF ILRFPTSRSW PHPDSGNLVA TYVGSDYTIH HRLVSLDFIY  660
SSGAKGMTIK PIQDMLLEQP ELRRLGRIVR SQ
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAC2103541e-132AC210354.1 Solanum lycopersicum cultivar Heinz 1706 chromosome 7 clone C07HBa0102J11, complete sequence.
GenBankHG9755191e-132HG975519.1 Solanum lycopersicum chromosome ch07, complete genome.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_016475140.10.0PREDICTED: uncharacterized protein LOC107796828
TrEMBLA0A0V0INF70.0A0A0V0INF7_SOLCH; Putative ovule protein
STRINGSolyc07g062050.2.10.0(Solanum lycopersicum)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
AsteridsOGEA93942325
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G78540.10.0SH2 domain protein B